#+ PIPELINE_NAME = Generate_Variome_Data.chromosome.v.0.3.11.for.Development.in.KOGIC.Lion.on.2020-12-00.250.Core.200.Rest #+ SCRIPT_DIR_PATH = /BiO/Share/Live/Jho/Pipeline/Generate_Variome_Data.chromosome.v.0.3.11/ #+ WORKSPACE_DIR_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Workspace/Pipeline.by.minsun/Generate_Variome_Data.chromosome.v.0.3.11.on.2020-12-23.250.200/ #+ DATA_ID_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Workspace/Pipeline.by.minsun/Generate_Variome_Data.chromosome.v.0.3.11.on.2020-12-23.250.200/inp_data_id/data_id_list.txt #+ AUT_CHR_NAME_LIST = chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22 #+ SEX_CHR_NAME_LIST = chrX,chrY #+ MIT_CHR_NAME = chrM #+ CHR_DBSNP_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Resource/Reference/hg19/snp/GATK-bundle-2.5/dbsnp_137.hg19.of.each.chromosome/dbsnp_137.hg19.{CHR_NAME}.vcf #+ CHR_SEQ_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Resource/Reference/hg19/chromosome/each/{CHR_NAME}.upper.fa #+ CHR_LEN_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Resource/Reference/hg19/chromosome/each/{CHR_NAME}.len.txt #+ PROCESSING_BLOCK_SIZE = 30000000 #+ UNCERTAINTY_PLATFORM_DATA_COUNT_MIN = 5 #+ CHR_ALL_SITE_GENOTYPE_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/GenoType.to.hg19.by.GATK.UnifiedGenotyper/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/{DATA_ID}/{DATA_ID}.{CHR_NAME}.genotype.rs.gz #+ PLOIDY_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Resource/Sample_Ploidy/{DATA_ID}.ploidy.txt #+ DO_INTEGRATE_PRIOR_GENOTYPE_FILE = True #+ PRIOR_GENOTYPE_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/VariomeData.to.hg19/KoVariome.0.8/Supplementary_Data/genotype/{INDIVIDUAL_ID}/variomeData.genotype.allSite.{INDIVIDUAL_ID}.{CHR_NAME}.txt.gz #+ SNP_ID_PREFIX = ks #+ DO_INTEGRATE_PRIOR_SNP_ID = True #+ PRIOR_SNP_ID_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/VariomeData.to.hg19/KoVariome.0.8/ID/snp_id/snp.id.{CHR_NAME}.txt #+ CHR_ALL_SITE_SNP_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/SNP.to.hg19.by.MAC.1.MAF.0.00.from.GenoType/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/VariomeData.250.Korean.with.Extended.Statistics/SNP/snp.{CHR_NAME}.allSite.txt.gz #+ CHR_VAR_SITE_SNP_ANNOTATION_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/SNP.to.hg19.by.MAC.1.MAF.0.00.from.GenoType/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/VariomeData.250.Korean.with.Extended.Statistics/SNPeff/snp.{CHR_NAME}.varSite.snpEff.vcf #+ INDEL_ID_PREFIX = ki #+ DO_INTEGRATE_PRIOR_INDEL_ID = True #+ PRIOR_INDEL_ID_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/VariomeData.to.hg19/KoVariome.0.8/ID/indel_id/indel.id.{CHR_NAME}.txt #+ INDEL_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/IDP.to.hg19.by.FreeBayes/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/VariomeData.250.Korean/IDP/IDP.vcf #+ CNV_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/CNV.to.hg19.by.CNVnator/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/{DATA_ID}/{DATA_ID}.cnvnator.cnv #+ DO_INTEGRATE_PRIOR_CNV_FILE = True #+ PRIOR_CNV_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/VariomeData.to.hg19/KoVariome.0.8/Supplementary_Data/cnv/{INDIVIDUAL_ID}.cnv.cnvnator.tsv #+ DO_INTEGRATE_PRIOR_SAMPLE_INFORMATION = True #+ PRIOR_SAMPLE_INFORMATION_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/VariomeData.to.hg19/KoVariome.0.8/Supplementary_Data/sample_information/sample_information.tsv #+ EXT_CHR_ALL_SITE_SNP_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/SNP.to.hg19.by.MAC.1.MAF.0.00.from.GenoType/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/VariomeData.250.Core.200.Rest.Korean.with.Extended.Statistics/SNP/snp.{CHR_NAME}.allSite.txt.gz #+ EXT_CHR_VAR_SITE_SNP_ANNOTATION_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/SNP.to.hg19.by.MAC.1.MAF.0.00.from.GenoType/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/VariomeData.250.Core.200.Rest.Korean.with.Extended.Statistics/SNPeff/snp.{CHR_NAME}.varSite.snpEff.vcf #+ EXT_INDEL_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Analysis/IDP.to.hg19.by.FreeBayes/WGS.of.CleanRead.of.Grade1.mapped.by.BWA.aln/VariomeData.250.Core.200.Rest.Korean/IDP/IDP.vcf #+ DO_CHECK_CONSISTENCY = True #+ DO_SAMPLING = True #+ SAMPLING_OPTION_FILE_PATH = /BiO/Research/Project1/KRISS-Korean-Variome-2012-03/Variome_Data_Generation/Workspace/Pipeline.by.minsun/Generate_Variome_Data.chromosome.v.0.3.11.on.2020-12-23.250.200/inp_sampling/sampling_option.opt #+ SAMPLING_SNP_FUNC_LIST = SPLICE-SITE,NON-SYNONYMOUS #+ SAMPLING_SNP_MINOR_ALLELE_CHR_COUNT = 3 #+ SAMPLING_SNP_MINOR_ALLELE_FREQUENCY = 0.050000 #+ SAMPLING_INDEL_FUNC_LIST = SPLICE-SITE,CODON_CHANGE,FRAME_SHIFT,INTRONIC #+ SAMPLING_INDEL_MINOR_ALLELE_CHR_COUNT = 3 #+ SAMPLING_INDEL_MINOR_ALLELE_FREQUENCY = 0.050000 #* chrName : chromosome name. #* pss : position. #* refNt : reference nucleotide. #* snpNts : SNP nucleotides. #* snpId : SNP id. #! chrName pss refNt snpNts snpId chrM 41 C C,T ks24053699 chrM 47 G A,G ks20126131 chrM 63 T C,T ks20126132 chrM 64 C C,T ks15163891 chrM 66 G A,G ks20126133 chrM 73 G C,G ks24053700 chrM 75 G A,G ks24053701 chrM 89 T C,T ks24053702 chrM 93 A A,G ks13784065 chrM 94 G A,G ks13784066 chrM 103 G A,G ks12081579 chrM 115 T C,T ks20126134 chrM 131 T C,T ks12081580 chrM 143 G A,G ks12081581 chrM 146 T C,T ks12081582 chrM 150 T C,T ks12081583 chrM 151 C C,T ks12081584 chrM 152 T C,T ks12081585 chrM 153 A A,G ks12081586 chrM 182 C C,T ks27932595 chrM 183 A A,G ks20126135 chrM 184 G A,G ks24053703 chrM 185 G A,G ks15163892 chrM 188 A A,G ks20126136 chrM 189 A A,G ks12081587 chrM 193 A A,G ks24053704 chrM 194 C C,T ks12081588 chrM 195 C C,T ks12081589 chrM 196 T C,T ks25322044 chrM 197 A A,G ks12081590 chrM 198 C C,T ks12081591 chrM 199 T C,T ks12081592 chrM 200 A A,G ks12081593 chrM 203 G A,G ks12081594 chrM 204 T C,T ks12081595 chrM 207 G A,G ks13784067 chrM 209 T C,T ks24053705 chrM 210 A A,G ks13784068 chrM 211 A A,G ks15163893 chrM 214 A A,G ks12681734 chrM 215 A A,G ks20126137 chrM 217 T C,T ks24053706 chrM 222 C C,T ks15163894 chrM 225 G A,G ks15163895 chrM 228 G A,G ks15163896 chrM 228 G A,G,T ks20126138 chrM 235 A A,G ks12081596 chrM 237 A A,G ks24053707 chrM 257 A A,G ks25322045 chrM 258 C C,T ks20126139 chrM 260 G A,G ks12081597 chrM 263 G A,G ks20126140 chrM 265 T C,T ks24053708 chrM 285 C C,T ks20126141 chrM 310 C C,T ks24053709 chrM 311 T C,T ks12081598 chrM 318 G A,G ks12081599 chrM 320 T C,T ks12081600 chrM 328 A A,G ks12081601 chrM 336 T C,T ks20126142 chrM 375 A A,G ks24053710 chrM 377 C C,T ks24053711 chrM 410 A A,T ks25322046 chrM 432 T C,T ks27932596 chrM 433 C C,T ks27932597 chrM 458 C C,T ks12081602 chrM 462 T C,T ks24053712 chrM 468 T C,T ks20126143 chrM 483 C C,T ks20126144 chrM 484 T C,T ks20126145 chrM 486 A A,G ks27932598 chrM 491 T C,T ks12081603 chrM 497 C C,T ks24053713 chrM 501 G A,G ks13784069 chrM 503 C C,T ks25322047 chrM 505 A A,G ks20126146 chrM 510 A A,G ks15163897 chrM 515 G A,G ks25322048 chrM 516 C C,T ks27932599 chrM 548 A A,G ks12081604 chrM 569 A A,C ks13784070 chrM 569 A A,C,G ks24053714 chrM 665 A A,G ks12081605 chrM 683 T C,T ks12081606 chrM 711 G A,G ks12081607 chrM 724 C C,T ks20126147 chrM 725 A A,G ks27932600 chrM 734 A A,G ks24053715 chrM 747 A A,G ks15163898 chrM 753 A A,G ks24053716 chrM 753 A A,G,T ks27932601 chrM 754 C C,T ks12081608 chrM 763 A A,G ks27932602 chrM 771 G A,G ks20126148 chrM 791 T C,T ks20126149 chrM 829 A A,G ks12081609 chrM 872 C C,T ks20126150 chrM 897 C C,T ks20126151 chrM 960 C C,T ks20126152 chrM 963 T C,T ks12081610 chrM 982 T C,T ks27932603 chrM 1007 T C,T ks20126153 chrM 1011 C C,T ks20126154 chrM 1043 A A,G ks20126155 chrM 1050 C C,T ks12081611 chrM 1097 T C,T ks12081612 chrM 1109 T C,T ks12081613 chrM 1120 A A,T ks20126156 chrM 1121 T C,T ks15163899 chrM 1150 A A,G ks27932604 chrM 1191 T C,T ks24053717 chrM 1224 A A,G ks20126157 chrM 1245 T C,T ks24053718 chrM 1286 T C,T ks27932605 chrM 1291 G A,G ks24053719 chrM 1312 C C,T ks20126158 chrM 1384 A A,C ks12081614 chrM 1393 T C,T ks20126159 chrM 1408 T C,T ks24053720 chrM 1440 G A,G ks12081615 chrM 1444 G A,G ks20126160 chrM 1522 T C,T ks27932606 chrM 1600 G A,G ks12081616 chrM 1666 G A,G ks24053721 chrM 1711 G A,G ks12081617 chrM 1713 C C,T ks15163900 chrM 1717 C C,T ks13784071 chrM 1721 G A,G ks13784072 chrM 1736 C C,T ks25322049 chrM 1738 A A,G ks12081618 chrM 1765 A A,G ks24053722 chrM 1768 T C,T ks20126161 chrM 1813 A A,G ks27932607 chrM 1821 T C,T ks20126162 chrM 1824 T C,T ks20126163 chrM 1826 T C,T ks27932608 chrM 1844 A A,G ks24053723 chrM 1851 C C,T ks15163901 chrM 1890 G A,G ks20126164 chrM 1945 A A,G ks12081619 chrM 1980 A A,G ks12081620 chrM 2058 G A,G ks13784073 chrM 2061 C C,T ks20126165 chrM 2222 A A,G ks20126166 chrM 2223 C C,T ks25322050 chrM 2246 T C,T ks20126167 chrM 2332 T C,T ks24053724 chrM 2354 C C,T ks15163902 chrM 2382 C C,T ks24053725 chrM 2401 A A,G ks20126168 chrM 2628 T C,T ks12081621 chrM 2708 G A,G ks12081622 chrM 2768 C C,T ks20126169 chrM 2774 C C,T ks12081623 chrM 2835 A A,G ks20126170 chrM 2837 C C,T ks24053726 chrM 2853 A A,G ks27932609 chrM 2859 T C,T ks12081624 chrM 2865 T C,T ks20126171 chrM 2887 T C,T ks24053727 chrM 2889 T C,T ks15163903 chrM 3012 G A,G ks12081625 chrM 3145 A A,G ks15163904 chrM 3203 T C,T ks24053728 chrM 3204 A A,G ks27932610 chrM 3207 C C,T ks12081626 chrM 3209 C C,T ks27932611 chrM 3222 A A,G ks15163905 chrM 3255 C C,T ks27932612 chrM 3291 T C,T ks24053729 chrM 3317 G A,G ks12081627 chrM 3336 T C,T ks15163906 chrM 3337 T C,T ks20126172 chrM 3369 T C,T ks12081628 chrM 3392 G A,G ks20126173 chrM 3395 T C,T ks15163907 chrM 3397 T C,T ks24053730 chrM 3398 A A,G ks24053731 chrM 3399 T C,T ks27932613 chrM 3400 A A,G ks20126174 chrM 3422 G A,G ks27932614 chrM 3427 A A,G ks24053732 chrM 3435 A A,G ks25322051 chrM 3436 C C,T ks25322052 chrM 3439 G A,G ks24053733 chrM 3448 A A,G ks24053734 chrM 3493 A A,G ks20126175 chrM 3498 C C,T ks15163908 chrM 3506 A A,G ks24053735 chrM 3532 G A,G ks24053736 chrM 3538 A A,G ks13784074 chrM 3550 C C,T ks24053737 chrM 3553 T A,T ks12081629 chrM 3568 C C,T ks12081630 chrM 3572 C C,T ks24053738 chrM 3592 G A,G ks20126176 chrM 3594 T C,T ks20126177 chrM 3604 C C,T ks24053739 chrM 3619 T C,T ks20126178 chrM 3640 A A,G ks25322053 chrM 3645 T C,T ks20126179 chrM 3667 G A,G ks20126180 chrM 3688 C C,T ks27932615 chrM 3694 G A,G ks24053740 chrM 3715 A A,G ks13784075 chrM 3730 A A,G ks12081631 chrM 3745 A A,G ks24053741 chrM 3760 A A,G ks12081632 chrM 3765 C C,T ks24053742 chrM 3778 T C,T ks20126181 chrM 3797 A A,G ks13784076 chrM 3817 A A,G ks27932616 chrM 3827 T C,T ks27932617 chrM 3835 G A,G ks12081633 chrM 3883 G A,G ks20126182 chrM 3940 C C,T ks27932618 chrM 3946 C C,T ks20126183 chrM 3961 C C,T ks12681735 chrM 3971 C C,T ks12081634 chrM 4026 C C,T ks20126184 chrM 4036 A A,G ks20126185 chrM 4048 T C,T ks12081635 chrM 4049 G A,G ks12081636 chrM 4072 C C,T ks12081637 chrM 4087 C C,T ks12681736 chrM 4090 C C,T ks25322054 chrM 4093 G A,G ks15163909 chrM 4114 G A,G ks12081638 chrM 4130 A A,G ks20126186 chrM 4141 C C,T ks20126187 chrM 4162 C C,T ks20126188 chrM 4165 A A,G ks12081639 chrM 4204 A A,G ks12681737 chrM 4217 T C,T ks15163910 chrM 4219 T C,T ks13784077 chrM 4220 G A,G ks20126189 chrM 4232 A A,G ks24053743 chrM 4249 T C,T ks12081640 chrM 4255 T C,T ks20126190 chrM 4344 A A,G ks12081641 chrM 4364 T C,T ks12081642 chrM 4387 T C,T ks12081643 chrM 4453 T C,T ks24053744 chrM 4492 G A,G ks15163911 chrM 4506 C C,T ks24053745 chrM 4539 C C,T ks12081644 chrM 4555 A A,G ks27932619 chrM 4563 A A,G ks12681738 chrM 4605 C C,T ks27932620 chrM 4613 T C,T ks20126191 chrM 4626 C C,T ks27932621 chrM 4640 T C,T ks13784078 chrM 4647 T C,T ks20126192 chrM 4655 C C,T ks24053746 chrM 4656 G A,G ks12081645 chrM 4671 C C,T ks13784079 chrM 4689 T C,T ks20126193 chrM 4697 T C,T ks15163912 chrM 4698 C C,T ks27932622 chrM 4705 A A,C ks27932623 chrM 4706 T C,T ks12081646 chrM 4716 A A,G ks12081647 chrM 4733 A A,G ks12081648 chrM 4737 T C,T ks12081649 chrM 4743 T C,T ks15163913 chrM 4768 A A,G ks27932624 chrM 4794 A A,G ks12081650 chrM 4812 A A,G ks20126194 chrM 4821 G A,G ks13784080 chrM 4825 A A,G ks12081651 chrM 4834 A A,G ks12081652 chrM 4842 G A,G ks12081653 chrM 4851 C C,T ks20126195 chrM 4854 G A,G ks27932625 chrM 4884 C C,T ks12081654 chrM 4896 A A,G ks12081655 chrM 4908 T C,T ks13784081 chrM 4927 C C,T ks25322055 chrM 4936 A A,C ks20126196 chrM 4937 C C,T ks20126197 chrM 4959 A A,G ks12081656 chrM 4960 G A,G ks20126198 chrM 5005 T C,T ks20126199 chrM 5022 T C,T ks20126200 chrM 5047 G A,G ks15163914 chrM 5049 T C,T ks20126201 chrM 5050 C C,T ks12081657 chrM 5064 T C,T ks25322056 chrM 5085 A A,G ks12081658 chrM 5087 C C,T ks20126202 chrM 5094 T C,T ks25322057 chrM 5097 T C,T ks24053747 chrM 5101 C C,T ks20126203 chrM 5103 A A,G ks25322058 chrM 5109 T C,T ks12081659 chrM 5118 C C,T ks20126204 chrM 5128 A A,G ks20126205 chrM 5148 G A,G ks12081660 chrM 5154 A A,G ks12081661 chrM 5179 C A,C ks12081662 chrM 5191 A A,G ks12081663 chrM 5193 A A,G ks24053748 chrM 5202 T C,T ks20126206 chrM 5232 G A,G ks12081664 chrM 5238 G A,G ks12081665 chrM 5262 G A,G ks20126207 chrM 5264 C C,T ks12081666 chrM 5292 T C,T ks12081667 chrM 5302 A A,G ks12081668 chrM 5352 A A,G ks12081669 chrM 5358 A A,G ks15163915 chrM 5418 G A,G ks12081670 chrM 5419 T C,T ks12081671 chrM 5436 C C,T ks15163916 chrM 5442 A A,G ks24053749 chrM 5443 T C,T ks20126208 chrM 5461 G A,G ks12081672 chrM 5463 C C,T ks24053750 chrM 5466 T C,T ks12681739 chrM 5467 A A,G ks27932626 chrM 5484 T C,T ks12081673 chrM 5493 T C,T ks24053751 chrM 5515 A A,G ks24053752 chrM 5530 A A,G ks15163917 chrM 5540 A A,G ks12081674 chrM 5583 A A,G ks27932627 chrM 5585 A A,G ks27932628 chrM 5586 G A,G ks20126209 chrM 5602 C C,T ks13784082 chrM 5603 C C,T ks24053753 chrM 5604 C C,T ks27932629 chrM 5619 T C,T ks12081675 chrM 5629 T C,T ks20126210 chrM 5641 A A,G ks15163918 chrM 5655 T C,T ks24053754 chrM 5656 T C,T ks27932630 chrM 5716 A A,G ks27932631 chrM 5745 G A,G ks24053755 chrM 5748 A A,G ks25322059 chrM 5774 G A,G ks12081676 chrM 5807 T C,T ks12081677 chrM 5822 G A,G ks12081678 chrM 5827 T C,T ks15163919 chrM 5837 A A,G ks24053756 chrM 5895 A A,G ks25322060 chrM 5912 C C,T ks20126211 chrM 5914 G A,G ks25322061 chrM 5919 T C,T ks20126212 chrM 5928 C C,T ks15163920 chrM 5965 T C,T ks20126213 chrM 5974 G A,G ks27932632 chrM 5979 A A,G ks25322062 chrM 5982 T C,T ks25322063 chrM 5988 C C,T ks12081679 chrM 5991 A A,G ks25322064 chrM 6024 G A,G ks13784083 chrM 6027 G A,G ks12081680 chrM 6042 C C,T ks25322065 chrM 6054 C C,T ks25322066 chrM 6075 C C,T ks12081681 chrM 6087 T C,T ks12081682 chrM 6102 C C,T ks24053757 chrM 6126 A A,G ks12681740 chrM 6180 G A,G ks20126214 chrM 6213 A A,G ks27932633 chrM 6216 C A,C ks24053758 chrM 6217 T C,T ks13784084 chrM 6222 T C,T ks12081683 chrM 6237 C C,T ks27932634 chrM 6254 T C,T ks12081684 chrM 6262 G A,G ks24053759 chrM 6268 G A,G ks12081685 chrM 6276 A A,G ks24053760 chrM 6279 T C,T ks24053761 chrM 6294 T C,T ks15163921 chrM 6306 G A,G ks20126215 chrM 6324 A A,G ks25322067 chrM 6333 A A,G ks20126216 chrM 6339 A A,G ks12081686 chrM 6366 T C,T ks12081687 chrM 6367 G A,G ks15163922 chrM 6376 A A,G ks27932635 chrM 6393 T C,T ks12081688 chrM 6408 T C,T ks12081689 chrM 6414 T C,T ks13784085 chrM 6417 A A,G ks27932636 chrM 6426 T C,T ks24053762 chrM 6446 C C,T ks27932637 chrM 6453 C C,T ks20126217 chrM 6456 C C,T ks12081690 chrM 6489 T C,T ks27932638 chrM 6504 A A,C ks12081691 chrM 6525 T C,T ks24053763 chrM 6532 C C,T ks12081692 chrM 6552 C C,T ks15163923 chrM 6597 C C,T ks24053764 chrM 6606 A A,G ks25322068 chrM 6615 T C,T ks25322069 chrM 6621 T C,T ks24053765 chrM 6648 A A,G ks20126218 chrM 6681 T C,T ks12081693 chrM 6682 T C,T ks20126219 chrM 6690 C C,T ks27932639 chrM 6702 A A,G ks13784086 chrM 6714 C C,T ks27932640 chrM 6720 T C,T ks20126220 chrM 6735 G A,G ks27932641 chrM 6738 A A,G ks24053766 chrM 6748 T C,T ks12081694 chrM 6753 A A,G ks12081695 chrM 6816 T C,T ks15163924 chrM 6900 G A,G ks20126221 chrM 6918 G A,G ks24053767 chrM 6961 C C,T ks20126222 chrM 6963 G A,G ks12081696 chrM 7023 T C,T ks25322070 chrM 7056 A A,G ks20126223 chrM 7062 A A,G ks25322071 chrM 7071 C C,T ks24053768 chrM 7143 T C,T ks24053769 chrM 7147 A A,G ks27932642 chrM 7152 C C,T ks24053770 chrM 7155 A A,G ks24053771 chrM 7182 C C,T ks25322072 chrM 7197 C A,C ks12081697 chrM 7203 A A,G ks24053772 chrM 7239 T C,T ks20126224 chrM 7246 A A,G ks13784087 chrM 7251 A A,G ks20126225 chrM 7270 G A,G ks27932643 chrM 7271 T C,T ks12081698 chrM 7279 T C,T ks25322073 chrM 7309 A A,T ks12081699 chrM 7338 G A,G ks24053773 chrM 7341 G A,G ks20126226 chrM 7373 T C,T ks12081700 chrM 7383 G A,G ks27932644 chrM 7390 T C,T ks20126227 chrM 7404 A A,G ks20126228 chrM 7425 A A,G ks13784088 chrM 7445 G A,G ks27932645 chrM 7461 A A,G ks24053774 chrM 7522 G A,G ks24053775 chrM 7552 A A,G ks27932646 chrM 7562 T C,T ks20126229 chrM 7573 T C,T ks27932647 chrM 7599 G A,G ks24053776 chrM 7601 G A,G ks13784089 chrM 7606 T C,T ks27932648 chrM 7622 T C,T ks12081701 chrM 7643 G A,G ks12081702 chrM 7650 A A,G ks12681741 chrM 7674 A A,G ks25322074 chrM 7685 T C,T ks12081703 chrM 7695 C C,T ks20126230 chrM 7712 T C,T ks15163925 chrM 7739 T C,T ks25322075 chrM 7763 G A,G ks24053777 chrM 7775 C C,T ks24053778 chrM 7776 G A,G ks20126231 chrM 7806 G A,G ks15163926 chrM 7817 C C,T ks12081704 chrM 7823 A A,G ks24053779 chrM 7829 A A,G ks20126232 chrM 7853 G A,G ks20126233 chrM 7854 G A,G ks12081705 chrM 7862 T C,T ks24053780 chrM 7868 C C,T ks12081706 chrM 7880 A A,G ks13784090 chrM 7910 C C,T ks15163927 chrM 7913 G A,G ks27932649 chrM 7928 C C,T ks12681742 chrM 7934 A A,G ks20126234 chrM 7959 C A,C ks12081707 chrM 7961 A A,G ks24053781 chrM 7962 T C,T ks25322076 chrM 7979 C C,T ks27932650 chrM 7981 A A,G ks15163928 chrM 8000 T C,T ks13784091 chrM 8021 G A,G ks12081708 chrM 8030 C C,T ks13784092 chrM 8109 A A,G ks12081709 chrM 8153 G A,G ks20126235 chrM 8159 A A,G ks20126236 chrM 8189 A A,G ks20126237 chrM 8201 T C,T ks12081710 chrM 8228 T C,T ks12081711 chrM 8252 G A,G ks20126238 chrM 8270 G A,G ks12081712 chrM 8273 C C,T ks27932651 chrM 8278 T C,T ks15163929 chrM 8292 A A,G ks25322077 chrM 8309 A A,G ks12081713 chrM 8335 G A,G ks27932652 chrM 8348 A A,G ks24053782 chrM 8349 A A,G ks27932653 chrM 8384 T C,T ks27932654 chrM 8393 G A,G ks12681743 chrM 8402 A A,G ks24053783 chrM 8405 T C,T ks20126239 chrM 8415 C C,T ks12081714 chrM 8420 T C,T ks27932655 chrM 8441 A A,G ks24053784 chrM 8460 A A,G ks25322078 chrM 8474 T C,T ks12081715 chrM 8486 G A,G ks12081716 chrM 8489 C C,T ks20126240 chrM 8521 A A,G ks25322079 chrM 8556 T C,T ks20126241 chrM 8558 G A,G ks13784093 chrM 8564 A A,G ks12081717 chrM 8585 G A,G ks12081718 chrM 8596 C C,T ks20126242 chrM 8619 T C,T ks25322080 chrM 8624 A A,G ks20126243 chrM 8629 C C,T ks20126244 chrM 8646 A A,G ks20126245 chrM 8655 T C,T ks20126246 chrM 8671 A A,G ks24053785 chrM 8685 C C,T ks20126247 chrM 8692 A A,G ks20126248 chrM 8698 G A,G ks20126249 chrM 8702 G A,G ks12081719 chrM 8706 T C,T ks12081720 chrM 8763 T C,T ks20126250 chrM 8765 G A,G ks12081721 chrM 8773 T C,T ks24053786 chrM 8782 C C,T ks20126251 chrM 8785 A A,G ks12081722 chrM 8789 C C,T ks20126252 chrM 8791 G A,G ks12081723 chrM 8794 T C,T ks12081724 chrM 8795 C C,T ks12081725 chrM 8826 T C,T ks24053787 chrM 8830 C C,T ks12081726 chrM 8839 G A,G ks27932656 chrM 8855 G A,G ks24053788 chrM 8857 G A,G ks12081727 chrM 8861 G A,G ks27932657 chrM 8869 T C,T ks20126253 chrM 8871 T C,T ks24053789 chrM 8896 T C,T ks25322081 chrM 8944 C C,T ks24053790 chrM 8963 A A,G ks12081728 chrM 8965 C C,T ks12081729 chrM 8976 T C,T ks20126254 chrM 8988 T C,T ks20126255 chrM 8995 G A,G ks24053791 chrM 9005 C C,T ks27932658 chrM 9010 C A,C ks20126256 chrM 9011 G A,G ks12081730 chrM 9013 T C,T ks24053792 chrM 9020 A A,G ks25322082 chrM 9023 G A,G ks27932659 chrM 9042 A A,G ks27932660 chrM 9054 G A,G ks12681744 chrM 9055 C C,T ks24053793 chrM 9056 G A,G ks20126257 chrM 9070 A A,G ks27932661 chrM 9080 A A,G ks12081731 chrM 9084 T C,T ks20126258 chrM 9085 T C,T ks20126259 chrM 9091 T C,T ks12081732 chrM 9093 C C,T ks27932662 chrM 9100 C A,C,T ks27932663 chrM 9102 T G,T ks24053794 chrM 9121 A A,G ks12081733 chrM 9124 G A,G ks12681745 chrM 9127 T C,T ks27932664 chrM 9129 T C,T ks25322083 chrM 9130 C C,T ks24053795 chrM 9140 G A,G ks27932665 chrM 9181 A A,G ks12081734 chrM 9188 T C,T ks27932666 chrM 9193 G A,G ks20126260 chrM 9216 C C,T ks27932667 chrM 9243 A A,G ks20126261 chrM 9255 A A,G ks20126262 chrM 9267 G A,G ks12081735 chrM 9279 C C,T ks20126263 chrM 9297 C C,T ks12081736 chrM 9302 C C,T ks12081737 chrM 9337 A A,G ks13784094 chrM 9339 A A,T ks25322084 chrM 9363 A A,G ks20126264 chrM 9378 G A,G ks13784095 chrM 9381 G A,G ks25322085 chrM 9390 A A,G ks24053796 chrM 9392 C C,T ks27932668 chrM 9405 A A,G ks24053797 chrM 9411 A A,G ks27932669 chrM 9420 C C,T ks24053798 chrM 9432 C C,T ks27932670 chrM 9468 T C,T ks20126265 chrM 9483 T C,T ks24053799 chrM 9495 A A,G ks12081738 chrM 9496 T C,T ks20126266 chrM 9532 A A,G ks20126267 chrM 9537 C C,T ks20126268 chrM 9541 C C,T ks12081739 chrM 9546 A A,G ks12081740 chrM 9549 G A,G ks12681746 chrM 9555 G A,G ks15163930 chrM 9576 G A,G ks13784096 chrM 9613 G A,G ks24053800 chrM 9616 T C,T ks25322086 chrM 9668 A A,G ks27932671 chrM 9712 C C,T ks12081741 chrM 9717 T C,T ks20126269 chrM 9729 C C,T ks27932672 chrM 9756 G A,G ks20126270 chrM 9771 T C,T ks25322087 chrM 9781 A A,G ks24053801 chrM 9798 T C,T ks24053802 chrM 9805 G A,G ks20126271 chrM 9813 C C,T ks24053803 chrM 9822 A A,G ks24053804 chrM 9825 T A,C,T ks12081742 chrM 9834 T C,T ks20126272 chrM 9837 T C,T ks20126273 chrM 9855 T C,T ks24053805 chrM 9857 T C,T ks20126274 chrM 9922 G A,G ks25322088 chrM 9933 G A,G ks20126275 chrM 9939 T C,T ks12081743 chrM 9945 T C,T ks27932673 chrM 9949 G A,G ks24053806 chrM 9951 T C,T ks12081744 chrM 9963 G A,G ks13784097 chrM 10031 C A,C ks15163931 chrM 10032 T C,T ks15163932 chrM 10041 C C,T ks24053807 chrM 10043 A A,G ks13784098 chrM 10098 A A,G ks20126276 chrM 10102 T C,T ks27932674 chrM 10104 A A,G ks12081745 chrM 10105 C C,T ks24053808 chrM 10173 G A,G ks27932675 chrM 10182 C C,T ks15163933 chrM 10209 T C,T ks12081746 chrM 10215 C C,T ks27932676 chrM 10224 C C,T ks27932677 chrM 10239 T C,T ks12681747 chrM 10269 C C,T ks20126277 chrM 10290 A A,G ks12081747 chrM 10311 G A,G ks12081748 chrM 10321 G A,G ks25322089 chrM 10323 T C,T ks15163934 chrM 10326 G A,G ks20126278 chrM 10346 T C,T ks12081749 chrM 10354 G G,T ks27932678 chrM 10380 A A,G ks12681748 chrM 10398 A A,G ks12081750 chrM 10399 G A,G ks12081751 chrM 10401 C C,T ks12081752 chrM 10404 A A,G ks25322090 chrM 10411 T C,T ks12081753 chrM 10428 G A,G ks27932679 chrM 10464 T A,C,T ks24053809 chrM 10464 T C,T ks20126279 chrM 10494 T C,T ks25322091 chrM 10536 T C,T ks27932680 chrM 10587 G A,G ks20126280 chrM 10590 G A,G ks27932681 chrM 10610 T C,T ks12081754 chrM 10638 C C,T ks20126281 chrM 10647 G A,G ks20126282 chrM 10668 T C,T ks20126283 chrM 10686 G A,G ks15163935 chrM 10751 A A,G ks25322092 chrM 10791 T C,T ks25322093 chrM 10802 G A,G ks12081755 chrM 10874 C C,T ks12081756 chrM 10877 A A,G ks24053810 chrM 10883 T C,T ks12081757 chrM 10886 T C,T ks24053811 chrM 10916 T C,T ks20126284 chrM 10944 A A,T ks15163936 chrM 10964 A A,C ks25322094 chrM 10977 C C,T ks12081758 chrM 10979 A A,G ks12081759 chrM 10988 A A,G ks24053812 chrM 11017 G A,G ks20126285 chrM 11018 C C,T ks12081760 chrM 11025 C C,T ks25322095 chrM 11055 C C,T ks12681749 chrM 11062 C C,T ks15163937 chrM 11066 A A,G ks25322096 chrM 11085 A A,G ks12081761 chrM 11093 A A,G ks24053813 chrM 11102 A A,G ks20126286 chrM 11132 C C,T ks24053814 chrM 11147 C C,T ks20126287 chrM 11150 G A,G ks13784099 chrM 11152 C C,T ks13784100 chrM 11168 A A,G ks24053815 chrM 11205 T C,T ks20126288 chrM 11216 C C,T ks12081762 chrM 11219 C C,T ks24053816 chrM 11240 A A,G ks20126289 chrM 11255 T C,T ks25322097 chrM 11256 T C,T ks12081763 chrM 11261 T C,T ks25322098 chrM 11300 T C,T ks20126290 chrM 11315 A A,G ks20126291 chrM 11348 A A,G ks24053817 chrM 11375 A A,G ks20126292 chrM 11384 T C,T ks12081764 chrM 11390 C C,T ks24053818 chrM 11438 T C,T ks24053819 chrM 11441 G A,G ks20126293 chrM 11466 T C,T ks20126294 chrM 11471 A A,G ks24053820 chrM 11519 G A,G ks20126295 chrM 11537 C C,T ks12081765 chrM 11546 T C,T ks27932682 chrM 11648 C C,T ks12081766 chrM 11666 C C,T ks20126296 chrM 11675 C C,T ks24053821 chrM 11697 G A,G ks12081767 chrM 11702 T C,T ks24053822 chrM 11723 C C,T ks27932683 chrM 11747 A A,G ks24053823 chrM 11765 A A,G ks24053824 chrM 11810 T C,T ks20126297 chrM 11816 C A,C ks24053825 chrM 11855 T C,T ks27932684 chrM 11865 T C,T ks20126298 chrM 11870 C C,T ks27932685 chrM 11879 T C,T ks15163938 chrM 11882 C C,T ks20126299 chrM 11888 G A,G ks12081768 chrM 11909 A A,G ks12081769 chrM 11912 C C,T ks24053826 chrM 11915 G A,G ks12081770 chrM 11936 T C,T ks25322099 chrM 11945 T C,T ks12081771 chrM 11948 A A,G ks24053827 chrM 11964 G A,G ks20126300 chrM 11966 C C,T ks13784101 chrM 11970 G A,G ks12081772 chrM 11993 T C,T ks27932686 chrM 12008 G A,G ks15163939 chrM 12014 A A,G ks12081773 chrM 12027 A A,G ks12081774 chrM 12071 G A,G ks15163940 chrM 12086 C C,T ks12081775 chrM 12089 C C,T ks27932687 chrM 12092 T C,T ks20126301 chrM 12093 C A,C ks15163941 chrM 12101 A A,G ks20126302 chrM 12110 C C,T ks20126303 chrM 12122 T C,T ks13784102 chrM 12128 G A,G ks25322100 chrM 12136 C C,T ks12081776 chrM 12162 T C,T ks20126304 chrM 12173 A A,G ks20126305 chrM 12193 G A,G ks20126306 chrM 12235 A A,G ks13784103 chrM 12249 A A,G ks20126307 chrM 12312 T C,T ks24053828 chrM 12339 T C,T ks20126308 chrM 12352 T C,T ks24053829 chrM 12355 T C,T ks20126309 chrM 12359 A A,G ks12081777 chrM 12362 A A,G ks12081778 chrM 12363 C C,T ks12081779 chrM 12373 G A,G ks12081780 chrM 12397 T C,T ks20126310 chrM 12398 A A,G ks12081781 chrM 12399 C C,T ks25322101 chrM 12406 C C,T ks12081782 chrM 12407 G A,G ks12081783 chrM 12409 T C,T ks20126311 chrM 12411 A A,G ks20126312 chrM 12415 T C,T ks24053830 chrM 12425 A A,G ks24053831 chrM 12439 T C,T ks12081784 chrM 12472 T C,T ks20126313 chrM 12478 T C,T ks27932688 chrM 12500 A A,G ks13784104 chrM 12506 C C,T ks27932689 chrM 12550 C C,T ks20126314 chrM 12562 G A,G ks24053832 chrM 12613 A A,G ks20126315 chrM 12622 C C,T ks25322102 chrM 12625 T C,T ks15163942 chrM 12631 G A,G ks24053833 chrM 12634 C C,T ks12081785 chrM 12643 A A,G ks20126316 chrM 12652 G C,G ks20126317 chrM 12655 A A,G ks13784105 chrM 12667 A A,C ks24053834 chrM 12673 A A,G ks12081786 chrM 12675 A A,G ks25322103 chrM 12697 T C,T ks20126318 chrM 12706 T C,T ks12081787 chrM 12716 A A,G ks13784106 chrM 12760 C C,T ks12081788 chrM 12772 G A,G ks12081789 chrM 12802 C C,T ks20126319 chrM 12805 T C,T ks25322104 chrM 12811 A A,G ks20126320 chrM 12812 T C,T ks12081790 chrM 12835 A A,G ks20126321 chrM 12854 C C,T ks27932690 chrM 12881 T C,T ks12081791 chrM 12883 C C,T ks12081792 chrM 12907 C A,C ks24053835 chrM 12910 A A,G ks27932691 chrM 12941 G A,G ks24053836 chrM 12951 A A,G ks15163943 chrM 12953 G A,G ks20126322 chrM 12958 T C,T ks12081793 chrM 13003 C C,T ks20126323 chrM 13021 T C,T ks24053837 chrM 13065 T C,T ks20126324 chrM 13075 A A,G ks12081794 chrM 13087 C C,T ks15163944 chrM 13105 A A,G ks12081795 chrM 13106 A A,G ks20126325 chrM 13136 G A,G ks20126326 chrM 13144 T C,T ks20126327 chrM 13146 G A,G ks20126328 chrM 13153 A A,G ks20126329 chrM 13175 T C,T ks12081796 chrM 13183 T C,T ks12081797 chrM 13195 G A,G ks13784107 chrM 13205 G A,G ks20126330 chrM 13225 T C,T ks25322105 chrM 13234 A A,G ks12081798 chrM 13240 C C,T ks12081799 chrM 13264 A A,G ks12081800 chrM 13270 A A,G ks15163945 chrM 13279 A A,G ks20126331 chrM 13300 A A,G ks20126332 chrM 13327 T C,T ks20126333 chrM 13328 A A,G ks20126334 chrM 13357 T C,T ks24053838 chrM 13360 G C,G ks20126335 chrM 13384 C C,T ks13784108 chrM 13414 A A,G ks13784109 chrM 13438 T C,T ks12081801 chrM 13466 A A,T ks25322106 chrM 13478 G A,G ks12081802 chrM 13486 A A,G ks12081803 chrM 13489 T C,T ks20126336 chrM 13501 T C,T ks20126337 chrM 13513 A A,G ks27932692 chrM 13543 A A,G ks24053839 chrM 13564 A A,G ks13784110 chrM 13591 G A,G ks13784111 chrM 13603 T C,T ks20126338 chrM 13614 T C,T ks20126339 chrM 13619 C A,C ks25322107 chrM 13621 T C,T ks20126340 chrM 13630 A A,G ks24053840 chrM 13636 T C,T ks20126341 chrM 13652 A A,C,G ks12081804 chrM 13666 T C,T ks15163946 chrM 13682 A A,G ks15163947 chrM 13709 G A,G ks24053841 chrM 13717 A A,G ks12081805 chrM 13723 A A,G ks20126342 chrM 13732 A A,G ks27932693 chrM 13749 A A,G ks27932694 chrM 13755 C C,T ks20126343 chrM 13760 G A,G ks12681750 chrM 13766 C C,T ks24053842 chrM 13769 T C,T ks24053843 chrM 13780 A A,G ks25322108 chrM 13781 A A,G ks24053844 chrM 13801 C A,C ks20126344 chrM 13819 T C,T ks20126345 chrM 13820 T C,T ks20126346 chrM 13835 A A,G ks27932695 chrM 13880 T C,T ks12081806 chrM 13888 A A,G ks20126347 chrM 13891 C C,T ks20126348 chrM 13915 C A,C ks25322109 chrM 13929 G A,C,G ks24053845 chrM 13929 G C,G ks12081807 chrM 13933 C C,T ks20126349 chrM 13935 C C,T ks20126350 chrM 13943 A A,G ks12081808 chrM 13968 C C,T ks20126351 chrM 13969 G A,G ks20126352 chrM 13990 C C,T ks24053846 chrM 14003 A A,G ks20126353 chrM 14004 C C,T ks24053847 chrM 14014 A A,G ks24053848 chrM 14017 G A,G ks27932696 chrM 14021 T C,T ks20126354 chrM 14050 C C,T ks24053849 chrM 14054 A A,G ks20126355 chrM 14068 C C,T ks25322110 chrM 14123 A A,G ks27932697 chrM 14134 A A,G ks20126356 chrM 14149 A A,G ks12081809 chrM 14150 C C,T ks13784112 chrM 14159 C C,T ks13784113 chrM 14163 G A,G ks12081810 chrM 14179 T C,T ks12081811 chrM 14181 T C,T ks15163948 chrM 14199 G A,G ks12081812 chrM 14201 T C,T ks13784114 chrM 14204 A A,G ks15163949 chrM 14270 A A,G ks15163950 chrM 14282 C C,G,T ks27932698 chrM 14282 C C,T ks24053850 chrM 14297 A A,G ks27932699 chrM 14309 T C,T ks15163951 chrM 14312 T C,T ks12081813 chrM 14315 A A,G ks20126357 chrM 14316 C C,T ks20126358 chrM 14319 T C,T ks12081814 chrM 14320 T C,T ks12081815 chrM 14324 G A,G ks27932700 chrM 14335 C C,T ks12681751 chrM 14341 C C,T ks12081816 chrM 14365 G A,G ks12081817 chrM 14418 A A,G ks24053851 chrM 14456 C C,T ks12081818 chrM 14471 T C,T ks20126359 chrM 14477 G A,G ks12081819 chrM 14503 T C,T ks20126360 chrM 14513 T C,T ks24053852 chrM 14531 T C,T ks12081820 chrM 14561 G A,G ks12081821 chrM 14565 A A,G ks25322111 chrM 14570 G A,G ks12081822 chrM 14582 T C,T ks24053853 chrM 14588 A A,G ks24053854 chrM 14606 A A,G ks20126361 chrM 14620 A A,G ks24053855 chrM 14669 C C,T ks12081823 chrM 14688 A A,G ks24053856 chrM 14693 A A,G ks27932701 chrM 14694 A A,G ks12681752 chrM 14745 C C,T ks20126362 chrM 14752 C C,T ks24053857 chrM 14756 A A,G ks20126363 chrM 14756 A A,G,T ks25322112 chrM 14757 A A,G ks24053858 chrM 14758 T C,T ks24053859 chrM 14774 C C,T ks12681753 chrM 14784 T C,T ks12081824 chrM 14828 C C,G ks27932702 chrM 14862 G A,G ks13784115 chrM 14870 G A,G ks27932703 chrM 14906 A A,G ks20126364 chrM 14928 A A,G ks15163952 chrM 14945 C C,T ks12081825 chrM 14972 T C,T ks25322113 chrM 14979 A A,G ks12081826 chrM 14980 T C,T ks12081827 chrM 14981 C A,C ks15163953 chrM 15002 T C,T ks25322114 chrM 15023 C C,T ks12081828 chrM 15039 A A,G ks20126365 chrM 15041 C C,T ks20126366 chrM 15044 G A,G ks12081829 chrM 15068 T C,T ks12081830 chrM 15072 T C,T ks20126367 chrM 15078 G A,G ks20126368 chrM 15091 T C,T ks12081831 chrM 15107 G A,G ks20126369 chrM 15111 G A,G ks20126370 chrM 15114 A A,G ks27932704 chrM 15120 G A,G ks24053860 chrM 15140 T C,T ks12081832 chrM 15149 G A,G ks12081833 chrM 15173 G A,G ks12081834 chrM 15185 T C,T ks12081835 chrM 15205 T C,T ks12081836 chrM 15218 G A,G ks27932705 chrM 15219 A A,G ks20126371 chrM 15222 G A,G ks20126372 chrM 15224 C C,T ks12081837 chrM 15230 T C,T ks20126373 chrM 15233 A A,G ks24053861 chrM 15236 A A,G ks13784116 chrM 15245 A A,G ks24053862 chrM 15251 C C,T ks12081838 chrM 15259 A A,G ks15163954 chrM 15262 G A,G ks24053863 chrM 15263 T C,T ks20126374 chrM 15264 C C,T ks27932706 chrM 15290 T C,T ks24053864 chrM 15293 C C,T ks20126375 chrM 15300 T C,T ks15163955 chrM 15302 A A,G ks12081839 chrM 15314 T C,T ks13784117 chrM 15318 G A,G ks15163956 chrM 15324 G A,G ks12081840 chrM 15347 G A,G ks15163957 chrM 15356 G A,G ks27932707 chrM 15401 C C,T ks24053865 chrM 15403 C C,T ks25322115 chrM 15441 T C,T ks15163958 chrM 15449 C C,T ks24053866 chrM 15455 T C,T ks27932708 chrM 15459 T C,T ks20126376 chrM 15460 C C,T ks12081841 chrM 15461 C C,T ks20126377 chrM 15467 G A,G ks24053867 chrM 15476 A A,G ks24053868 chrM 15480 T C,T ks12681754 chrM 15488 A A,T ks12081842 chrM 15498 G A,G ks12081843 chrM 15509 C C,T ks12081844 chrM 15519 C C,T ks12081845 chrM 15520 T C,T ks27932709 chrM 15525 A A,G ks24053869 chrM 15531 T C,T ks27932710 chrM 15536 C C,T ks12081846 chrM 15554 G A,G ks25322116 chrM 15563 A A,G ks13784118 chrM 15566 T C,T ks27932711 chrM 15587 T C,T ks25322117 chrM 15602 T C,T ks24053870 chrM 15623 T C,T ks25322118 chrM 15663 A A,G ks12081847 chrM 15671 T C,T ks24053871 chrM 15672 A A,G ks25322119 chrM 15689 C C,T ks25322120 chrM 15710 C C,T ks24053872 chrM 15713 A A,G ks24053873 chrM 15722 T C,T ks27932712 chrM 15725 A A,G ks12081848 chrM 15728 C C,T ks24053874 chrM 15735 G A,G ks12081849 chrM 15747 A A,G ks12081850 chrM 15754 C C,T ks20126378 chrM 15759 A A,G ks24053875 chrM 15774 G A,G ks12081851 chrM 15785 T C,T ks12081852 chrM 15788 T C,T ks24053876 chrM 15794 C C,T ks20126379 chrM 15800 A A,G ks27932713 chrM 15807 G A,G ks20126380 chrM 15821 C C,T ks20126381 chrM 15833 C C,T ks12081853 chrM 15849 A A,G ks27932714 chrM 15851 T C,T ks12081854 chrM 15852 A A,G ks12081855 chrM 15861 A A,G ks12081856 chrM 15869 C C,T ks20126382 chrM 15875 A A,G ks12081857 chrM 15884 G A,G ks12081858 chrM 15885 G A,C,G ks24053877 chrM 15885 G A,G ks15163959 chrM 15892 C C,T ks24053878 chrM 15901 T C,T ks24053879 chrM 15902 A A,G ks24053880 chrM 15904 A A,G ks25322121 chrM 15925 A A,G ks20126383 chrM 15927 C C,T ks20126384 chrM 15928 G A,G ks12081859 chrM 15929 G A,G ks20126385 chrM 15931 G A,G ks12081860 chrM 15942 T C,T ks24053881 chrM 15952 A A,G ks15163960 chrM 15955 A A,G ks12081861 chrM 15969 T C,T ks13784119 chrM 16001 G A,G ks12681755 chrM 16039 A A,G ks20126386 chrM 16043 G A,G ks20126387 chrM 16052 A A,G ks20126388 chrM 16067 A A,G ks20126389 chrM 16071 A A,G ks15163961 chrM 16076 T C,T ks20126390 chrM 16087 T C,T ks12081862 chrM 16093 T C,T ks20126391 chrM 16094 T C,T ks12081863 chrM 16096 C C,T ks27932715 chrM 16103 T C,T ks20126392 chrM 16105 C C,T ks20126393 chrM 16109 C C,T ks20126394 chrM 16112 C C,T ks12081864 chrM 16115 C C,T ks15163962 chrM 16127 T C,T ks12081865 chrM 16130 G A,G ks12081866 chrM 16135 C C,T ks25322122 chrM 16137 T C,T ks12081867 chrM 16139 A A,G ks27932716 chrM 16141 T C,T ks12081868 chrM 16146 G A,G ks12081869 chrM 16149 C C,T ks15163963 chrM 16151 C C,T ks12081870 chrM 16153 T C,T ks20126395 chrM 16155 T C,T ks15163964 chrM 16163 A A,G ks12681756 chrM 16165 A A,G ks12081871 chrM 16167 A A,G ks24053882 chrM 16168 C C,T ks12081872 chrM 16169 C C,T ks20126396 chrM 16170 C C,T ks24053883 chrM 16171 A A,G ks12081873 chrM 16172 A A,G ks12081874 chrM 16173 C C,T ks12081875 chrM 16174 C C,T ks24053884 chrM 16175 C C,T ks13784120 chrM 16177 C C,T ks20126397 chrM 16180 C C,T ks20126398 chrM 16183 A A,C ks12081876 chrM 16184 C A,C ks20126399 chrM 16185 C A,C ks12081877 chrM 16185 C A,C,G ks20126400 chrM 16186 C C,T ks12081878 chrM 16187 C C,T ks15163965 chrM 16188 C C,T ks12081879 chrM 16189 C C,T ks12081880 chrM 16190 C C,T ks20126401 chrM 16191 C C,T ks12081881 chrM 16194 C C,T ks15163966 chrM 16196 A A,G ks24053885 chrM 16197 T C,T ks24053886 chrM 16206 G A,G ks24053887 chrM 16211 T C,T ks12081882 chrM 16215 G A,G ks20126402 chrM 16216 C C,T ks13784121 chrM 16217 A A,G ks25322123 chrM 16219 T C,T ks12081883 chrM 16220 C C,T ks24053888 chrM 16224 C C,T ks20126403 chrM 16225 T C,T ks12081884 chrM 16226 T C,T ks24053889 chrM 16229 A A,G ks13784122 chrM 16233 T C,T ks12681757 chrM 16234 C A,C ks12081885 chrM 16236 C C,T ks12081886 chrM 16237 A A,G ks20126404 chrM 16244 C C,T ks27932717 chrM 16245 T C,T ks12081887 chrM 16246 G A,G ks27932718 chrM 16247 C C,T ks20126405 chrM 16250 C C,T ks12081888 chrM 16251 T C,T ks12081889 chrM 16257 G A,G ks24053890 chrM 16258 C C,T ks12081890 chrM 16259 C A,C ks12081891 chrM 16259 C A,C,T ks20126406 chrM 16260 A A,C ks24053891 chrM 16262 C C,T ks12081892 chrM 16263 C C,T ks12081893 chrM 16264 C C,T ks20126407 chrM 16265 T C,T ks24053892 chrM 16266 C C,T ks15163967 chrM 16267 A A,C ks12081894 chrM 16268 C A,C,G,T ks13784123 chrM 16268 C C,G,T ks12681758 chrM 16268 C C,T ks12081895 chrM 16270 C C,T ks20126408 chrM 16272 C C,T ks20126409 chrM 16276 G A,G ks12081896 chrM 16280 C C,T ks12081897 chrM 16286 A A,G ks15163968 chrM 16289 C C,T ks24053893 chrM 16290 T C,T ks20126410 chrM 16292 C C,T ks12081898 chrM 16293 C C,T ks12081899 chrM 16294 C C,T ks24053894 chrM 16295 A A,G ks15163969 chrM 16296 C C,T ks20126411 chrM 16297 C C,T ks20126412 chrM 16298 C C,T ks24053895 chrM 16299 T C,T ks12081900 chrM 16300 T C,T ks12081901 chrM 16301 A A,G ks24053896 chrM 16304 A A,G ks15163970 chrM 16306 T C,T ks12081902 chrM 16311 A A,G ks20126413 chrM 16313 T C,T ks12081903 chrM 16318 A A,G ks20126414 chrM 16319 A A,G ks25322124 chrM 16321 G A,G ks12081904 chrM 16326 T C,T ks12081905 chrM 16327 T C,T ks12081906 chrM 16329 C C,T ks12081907 chrM 16337 A A,G ks20126415 chrM 16346 C C,T ks12081908 chrM 16354 T C,T ks15163971 chrM 16356 C C,T ks20126416 chrM 16357 C A,C,T ks27932719 chrM 16357 C C,T ks12081909 chrM 16358 T C,T ks20126417 chrM 16359 T C,T ks12081910 chrM 16362 C C,T ks20126418 chrM 16364 T C,T ks12081911 chrM 16367 C C,T ks12081912 chrM 16373 A A,G ks24053897 chrM 16392 G A,G ks20126419 chrM 16392 G A,G,T ks27932720 chrM 16393 G A,G ks25322125 chrM 16400 G A,G ks24053898 chrM 16401 A A,G ks12681759 chrM 16424 T C,T ks20126420 chrM 16454 T C,T ks15163972 chrM 16461 C C,T ks27932721 chrM 16465 A A,G ks12081913 chrM 16484 A A,G ks20126421 chrM 16499 A A,G ks12081914 chrM 16504 T C,T ks20126422 chrM 16521 C C,T ks12081915 chrM 16525 A A,G ks25322126 chrM 16526 A A,G ks27932722 chrM 16528 G A,G ks27932723 chrM 16529 C C,T ks20126423